PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01060.30
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 253aa    MW: 27437.3 Da    PI: 9.5361
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01060.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-192874555
            AP2  5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   GVr ++ +gr++AeIrdp   gk++r++lg+f+taeeAa+a++aa+++++g
  Jcr4S01060.30 28 GVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAARAYDAAAREFRG 74
                   9*****.**********8...557************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.4842582IPR001471AP2/ERF domain
PRINTSPR003673.6E-92637IPR001471AP2/ERF domain
SMARTSM003806.5E-352888IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.0E-312883IPR001471AP2/ERF domain
PfamPF008474.6E-132874IPR001471AP2/ERF domain
CDDcd000183.14E-172884No hitNo description
SuperFamilySSF541712.29E-212883IPR016177DNA-binding domain
PRINTSPR003673.6E-94864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MESKRLERKK WNXTPIPPRS ATEALGNGVR KRPWGRYAAE IRDPGKKTRV WLGTFDTAEE  60
AARAYDAAAR EFRGSKAKTN FPTVTELNNA AAAAVAAGAV TVARSPSQSS TVESSSPTPP  120
RAASPPPPLD LTLNIPSHQH HHLRHGHFPT GVIFPGGAWI SLAAEAHPVF FFDAFSAQGE  180
NNNNNKNNII NNNKIHSKNI NLCRLDRTVM VSSGVHSDSD SSSVVVDYDH DRSPCNKGLS  240
LDLDLNFPPA EVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-182782460ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0763270.0DQ076327.1 Jatropha curcas putative DRE-binding ERF3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001295676.18e-83ethylene-responsive transcription factor 4
TrEMBLA0A067LBL11e-166A0A067LBL1_JATCU; Uncharacterized protein
STRINGPOPTR_0001s40770.16e-65(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.11e-21ethylene responsive element binding factor 4